PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 245aa    MW: 27776.9 Da    PI: 5.3939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-3053111259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+
  XP_009628910.1  53 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 111
                     699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3143113IPR003657WRKY domain
PROSITE profilePS5081131.2547113IPR003657WRKY domain
SuperFamilySSF1182901.31E-2550113IPR003657WRKY domain
SMARTSM007745.4E-3552112IPR003657WRKY domain
PfamPF031062.6E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGKSRPPKSE SKTSRLLEPE FVAPKKRKMT QKVVITVQME ANAIKQKNEG APSDCWSWRK  60
YGQKPIKGSP YPRGYYKCSS SKGCSAKKQV ERSSTDSSLF IITYTSTHNH PGPNFPNKDT  120
DPVTQDTAMT LQQDQEPITD RHMSLEDNDD DSQSFHYSKS PFNSTTSISQ GIHVQQEENQ  180
FTDKFLGTIS YDDFLPLSYP QLMKFPKSEL SEENDFYDEL GELQLPPSFT SFAGIFEETI  240
LVDPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18531131574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-70HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628910.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
RefseqXP_016470170.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
TrEMBLM1AI281e-122M1AI28_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232721e-118(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-23WRKY DNA-binding protein 35